| 201 | 2743 | National Institute of Infectious Diseases | 323 | 682 | 2538 | 3879 |
| 202 | 3253 | National Institute of Japanese Literature | 299 | 1173 | 2538 | 3879 |
| 203 | 3443 | Independent Administrative Institution National Research Institute for Cultural Properties, Tokyo | 266 | 1464 | 2538 | 3879 |
| 204 | 166 | High Energy Accelerator Research Organization | 232 | 384 | 358 | 255 |
| 205 | 195 | National Institute for Environmental Studies | 228 | 367 | 315 | 384 |
| 206 | 116 | National Institute for Materials Science | 218 | 575 | 74 | 102 |
| 207 | 1467 | National Agriculture and Food Research Organization | 215 | 4620 | 2538 | 364 |
| 208 | 2134 | Geological Survey Japan | 199 | 263 | 2538 | 3879 |
| 209 | 5357 | Hydrographic and Oceanographic Department Japan Coast Guard | 199 | 4509 | 2538 | 3879 |
| 210 | 112 | Japan Aeroespace Exploration Agency | 189 | 85 | 678 | 457 |
| 211 | 171 | Japan Agency for Marine-Earth Science and Technology | 170 | 319 | 182 | 405 |
| 212 | 38 | Institute of Physical and Chemical Research | 154 | 128 | 89 | 56 |
| 213 | 2866 | International Research Center for Japanese Studies | 136 | 856 | 2538 | 3879 |
| 214 | 252 | Japan Atomic Energy Agency | 134 | 571 | 659 | 399 |
| 215 | 41 | National Institute of Advanced Industrial Science & Technology | 118 | 125 | 57 | 91 |
| 216 | 293 | National Institute of Genetics Mishima | 106 | 421 | 367 | 904 |
| 217 | 222 | Japan Meteorological Agency | 88 | 90 | 658 | 1438 |
| 218 | 1461 | Japan Health & Research Institute | 18 | 52 | 2538 | 3879 |
| 219 | 106 | National Institute of Informatics | 5 | 78 | 406 | 665 |
| 220 | 64 | Japan Science & Technology Agency | 4 | 29 | 2538 | 58 |
