| 201 | 537 | National Institute of Polar Research | 492 | 800 | 1054 | 1186 |
| 202 | 529 | Japanese Foundation for Cancer Research | 2240 | 1326 | 948 | 592 |
| 203 | 510 | National Center Neurology Psychiatry | 1787 | 1033 | 976 | 741 |
| 204 | 463 | National Cardiovascular Center | 1949 | 1014 | 894 | 612 |
| 205 | 354 | Okinawa Industrial Technology Center | 569 | 648 | 221 | 817 |
| 206 | 293 | National Institute of Genetics Mishima | 106 | 421 | 367 | 904 |
| 207 | 252 | Japan Atomic Energy Agency | 134 | 571 | 659 | 399 |
| 208 | 222 | Japan Meteorological Agency | 88 | 90 | 658 | 1438 |
| 209 | 195 | National Institute for Environmental Studies | 228 | 367 | 315 | 384 |
| 210 | 193 | National Cancer Center | 668 | 491 | 513 | 209 |
| 211 | 183 | National Astronomical Observatory Japan | 394 | 231 | 578 | 438 |
| 212 | 175 | National Institute of Information and Communications | 426 | 238 | 323 | 446 |
| 213 | 171 | Japan Agency for Marine-Earth Science and Technology | 170 | 319 | 182 | 405 |
| 214 | 166 | High Energy Accelerator Research Organization | 232 | 384 | 358 | 255 |
| 215 | 116 | National Institute for Materials Science | 218 | 575 | 74 | 102 |
| 216 | 112 | Japan Aeroespace Exploration Agency | 189 | 85 | 678 | 457 |
| 217 | 106 | National Institute of Informatics | 5 | 78 | 406 | 665 |
| 218 | 64 | Japan Science & Technology Agency | 4 | 29 | 2538 | 58 |
| 219 | 41 | National Institute of Advanced Industrial Science & Technology | 118 | 125 | 57 | 91 |
| 220 | 38 | Institute of Physical and Chemical Research | 154 | 128 | 89 | 56 |
